The 28S ribosomal RNA targeted loci project is a RefSeq curated data set sourced from INSDC records. At a minimum the sequence contains the hyper variable D1/D2 region and each record contain a collection identifier (predominantly type material) from a public collection. The presence of the 28S signature has been verified by the ribovore pipeline (https://github.com/nawrockie/ribovore) using hidden Markov and covariance models. Other verification steps for example checking for vector sequences, too many ambiguous nucleotides, and misassembled sequences are also included. LSU RefSeq accessions (NG_ ) include sequences mostly obtained from type specimens and a few from reference specimens. Type and reference identifiers are curated by NCBI Taxonomy. The collection source of type material is indicated in each record and collection acronyms follows the collection codes maintained at https://www.ncbi.nlm.nih.gov/biocollections/. All sequences will have the same project ID and can be found as such. Database URL: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA51803.
GBIF url: https://www.gbif.org/dataset/bf3f09bd-3af6-45be-a2c4-bd5c285cab8a
Citation: Robbertse B (2024). Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project.. National Center for Biotechnology Information (NCBI). Occurrence dataset https://doi.org/10.15468/jzfdew accessed via GBIF.org on 2024-04-29.
GBIF url: https://www.gbif.org/dataset/bf3f09bd-3af6-45be-a2c4-bd5c285cab8a
Citation: Robbertse B (2024). Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project.. National Center for Biotechnology Information (NCBI). Occurrence dataset https://doi.org/10.15468/jzfdew accessed via GBIF.org on 2024-04-29.
資料集編號
bf3f09bd-3af6-45be-a2c4-bd5c285cab8a (DatasetUUID)
其他標題
資料集作者
Barbara Robbertse
資料集發佈者
National Center for Biotechnology Information (NCBI)
來源
GBIF
資料集標籤
授權
創用CC-姓名標示
詮釋資料更新日期
2024-04-29
觀測資料最新匯入日期
類群
真菌類
紀錄筆數
94
下載次數
182
下載觀測紀錄
物種 | 原始紀錄物種 | 類群 | 日期 | 行政區 | 資料集 | |
---|---|---|---|---|---|---|
Diaporthosporella macarangae Tennakoon, C.H. Kuo & K.D. Hyde, 2021 | 2019-07-10 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | ||||
Micropeltis 耳微盾菌屬 | Micropeltis ficina Tennakoon, C.H. Kuo & K.D. Hyde, 2021 | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Nielozyma formosana Nakase, Tsuzuki, F.L. Lee & M. Takash. ex X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout, 2015 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||||
Piskurozyma taiwanensis Nakase, Tsuzuki & M. Takash. ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout, 2020 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||||
Pseudozyma | Pseudozyma pruni G.Y. Liou, Y.H. Wei & F.L. Lee, 2009 | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Farysia 黑穗菌屬 | Farysia taiwaniana (P.-H. Wang, Y.-T. Wang & S.-H. Yang) Begerow, Q.M. Wang, F.Y. Bai & Boekhout, 2015 | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Utharomyces epallocaulus | Utharomyces epallocaulus Boedijn, 1958 | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Tremella tropica 熱帶銀耳 | Tremella tropica Chee J. Chen, 1998 | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Achroiostachys saccharicola L. Lombard & Crous, 2016 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||||
Vanrija | Vanrija nantouana (C.F. Lee) Kachalkin, A.M. Yurkov & Boekhout, 2015 | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Leptosphaerulina 小光腔菌屬 | Leptosphaerulina longiflori Tennakoon, C.H. Kuo & K.D. Hyde, 2019 | 真菌類 | 2018-06-20 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | ||
Rhynchogastrema fermentans (Lee) X.Z. Liu, F.Y. Bai, M. Groenew., Boekhout & A.M. Yurkov, 2015 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||||
Gliocephalotrichum humicola L. Lombard, Cheew. & Crous, 2014 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||||
Thelonectria coronalis Salgado & Guu, 2013 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||||
Zasmidium iteae 鼠刺疣絲孢菌 | Zasmidium iteae (R. Kirschner) U. Braun, C. Nakash., Videira & Crous, 2017 | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Flabellascoma cycadicola A. Hashim., K. Hiray. & Kaz. Tanaka, 2018 | 2005-11-28 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | ||||
Candida | [Candida] yuanshanica | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Candida | [Candida] dajiaensis | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Candida | [Candida] jianshihensis | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Ruinenia diospyri (Nakase, Tsuzuki, F.L. Lee, Jindam. & M. Takash.) Q.M. Wang, F.Y. Bai, 2015 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||||
Memnoniella | Memnoniella celtidis Tennakoon, C.H. Kuo & K.D. Hyde, 2021 | 真菌類 | 2019-07-24 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | ||
Pseudoneottiospora cannabacearum Tennakoon, C.H. Kuo & K.D. Hyde, 2021 | 2019-10-10 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | ||||
Arxiella | Arxiella celtidis Tennakoon, C.H. Kuo & K.D. Hyde, 2021 | 真菌類 | 2019-06-05 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | ||
Neoanthostomella fici Tennakoon, C.H. Kuo & K.D. Hyde, 2021 | 2019-07-28 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | ||||
Neodictyosporium macarangae Tennakoon, C.H. Kuo & K.D. Hyde, 2021 | 2019-08-05 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. |