The 28S ribosomal RNA targeted loci project is a RefSeq curated data set sourced from INSDC records. At a minimum the sequence contains the hyper variable D1/D2 region and each record contain a collection identifier (predominantly type material) from a public collection. The presence of the 28S signature has been verified by the ribovore pipeline (https://github.com/nawrockie/ribovore) using hidden Markov and covariance models. Other verification steps for example checking for vector sequences, too many ambiguous nucleotides, and misassembled sequences are also included. LSU RefSeq accessions (NG_ ) include sequences mostly obtained from type specimens and a few from reference specimens. Type and reference identifiers are curated by NCBI Taxonomy. The collection source of type material is indicated in each record and collection acronyms follows the collection codes maintained at https://www.ncbi.nlm.nih.gov/biocollections/. All sequences will have the same project ID and can be found as such. Database URL: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA51803.
GBIF url: https://www.gbif.org/dataset/bf3f09bd-3af6-45be-a2c4-bd5c285cab8a
Citation: Robbertse B (2024). Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project.. National Center for Biotechnology Information (NCBI). Occurrence dataset https://doi.org/10.15468/jzfdew accessed via GBIF.org on 2024-04-29.
GBIF url: https://www.gbif.org/dataset/bf3f09bd-3af6-45be-a2c4-bd5c285cab8a
Citation: Robbertse B (2024). Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project.. National Center for Biotechnology Information (NCBI). Occurrence dataset https://doi.org/10.15468/jzfdew accessed via GBIF.org on 2024-04-29.
資料集編號
bf3f09bd-3af6-45be-a2c4-bd5c285cab8a (DatasetUUID)
其他標題
資料集作者
Barbara Robbertse
資料集發佈者
National Center for Biotechnology Information (NCBI)
來源
GBIF
資料集標籤
授權
創用CC-姓名標示
詮釋資料更新日期
2024-04-29
觀測資料最新匯入日期
類群
真菌類
紀錄筆數
94
下載次數
198
下載觀測紀錄
物種 | 原始紀錄物種 | 類群 | 日期 | 行政區 | 資料集 | |
---|---|---|---|---|---|---|
Coemansia 下梳黴屬 | Coemansia umbellata S.C. Chuang, H.M. Ho, J.L. Tsai & Benny, 2017 | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Candida | [Candida] sanyiensis | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Fibrodontia alba Yurchenko & Sheng H. Wu, 2012 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||||
Xylodon | Xylodon filicinus Yurchenko & Riebesehl, 2019 | 真菌類 | 2011-07-31 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | ||
Ramichloridium bicellularipes | Ramichloridium bicellularipes R. Kirschner, 2010 | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Scopuloides 銳岩菌屬 | Scopuloides allantoidea C.C. Chen & Sheng H. Wu, 2021 | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Crustodontia taiwanensis C.C. Chen & Sheng H. Wu, 2021 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||||
Phanerochaete | Phanerochaete rhizomorpha C.C. Chen, Sheng H. Wu & S.H. He, 2021 | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Periconiella machilicola | Periconiella machilicola R. Kirschner, 2010 | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Teratoramularia kirschneriana Videira & Crous, 2016 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||||
Cladocillium musae Chun-Hao Chen & R. Kirschner, 2020 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||||
Humicola | Humicola phialophoroides W.H. Ko, Ching H. Yang, Mei J. Lin, Chi Y. Chen & Y.J. Tsou, 2011 | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Rhodotorula | Rhodotorula taiwanensis F.L. Lee & C.H. Huan g ex Denchev & T. Denchev, 2021 F.L. Lee & C.H. Huang ex Denchev & T. Denchev, 2021 | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Candida | [Candida] smagusa | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Trichaleurina | Trichaleurina tenuispora M. Carbone, Yei Z. Wang & Cheng L. Huang, 2013 | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Bulleribasidium setariae (Nakase, Tsuzuki, F.L. Lee & M. Takash.) Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout, 2015 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||||
Candida touchengensis | [Candida] touchengensis | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Lyomyces | Lyomyces orientalis Riebesehl, Yurchenko & Langer, 2017 | 真菌類 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||
Cystobasidiopsis lophatheri (Nakase, Tsuzuki, F.L. Lee, Jindam. & M. Takash.) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||||
Bulleribasidium begoniae (Nakase, Tsuzuki, F.L. Lee & M. Takash.) Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout, 2015 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||||
Globulisebacina chenii R. Kirschner, 2017 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||||
Toshionella taiwanensis C. Mayers, T.C. Harr. & H.H. Shih., 2019 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | |||||
Falholtia kaohsiungensis (S.Y. Hsieh, Goh & C.H. Kuo) W.P. Wu & Y.Z. Diao, 2022 | 2019-11-17 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | ||||
Hyaloterminalis alishanensis Rathnayaka, C.H. Kuo & K.D. Hyde, 2020 | 2019-08-16 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. | ||||
Phanerochaete | Phanerochaete canobrunnea Sheng H. Wu, C.C. Chen & C.L. Wei, 2018 | 真菌類 | 2015-06-23 | 南投縣魚池鄉 | Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project. |